Basic Information
VIS ID
TVIS10018159
Fusion event
HBV-chr2 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
458
Host Sequence
Chromosome
chr2
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
118518164/117760588 (Hg38)
End
118543572/117785996 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/4039220; hsa-mir-10b/Downstream/9637541;
Nearest TSS
ENST00000437798/Upstream/1945925; ENST00000489933/Downstream/18178;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/2597399, chr2-CpG: 48/Downstream/28540
Upstream sequence
AGAAAGCACCTGTGAGGCCAGCCTCTTGTCTGAGCCCCTGCCCGGAGACTCCGAGGACATTCGAGCTCTCAACCCCAGACAGACGCTGAGGGTGGAACCT
Downstream sequence
TGTTCTCCAAATGACTCTTAATGTTTTCAATACTTATAGTTTGTCTGTCTCAACCAAAATTGATTCAATCTCTTTATATGTAGTCTTCTACAAAAGAAAA
Target sequence
cacctagaaaaaaaatataaaatacagtctctcaggctgccctctagcccaaccaaaccagaatctctcgaggtggtcacaaggcactggtattttgtctttaactccaaaatacttctaaaatacaaccagggttgagaacctctgATTTATACCATCTGCTGtgtgggatttaaaacatggccccaaaattctttggcatgtctgtcattaggaggtagggtcgagggtccctcccctagaatcagggctcct
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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