Basic Information
VIS ID
TVIS10018164
Fusion event
HBV-chr11 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
984
Host Sequence
Chromosome
chr11
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
111016442/111145718 (Hg38)
End
111016442/111145718 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10392/Upstream/7295738; hsa-let-7a-2/Downstream/202039;
Nearest TSS
ENST00000527297/Upstream/48361; ENST00000635886/Downstream/33923;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/432558, chr11-CpG: 114/Downstream/152861
Upstream sequence
CAGGAGCAGAATCTTATTTTTATTTTAGATTTTCAGTGTCTTTGCTTTGGGAAAGTTTAGTACagtagagggcaattgaacccctgtgcacccattatca
Downstream sequence
TACCCCAAGTCCACCTGCCTATCCATCCTGCGAGCTCCTTGGGTCCTGCAATCTCCAGGGCTGCCCCTGTAGGTTGCTTAAAAGGGACAGTATTCTCAGT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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