Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018167
Fusion event
HBV-OR2A2 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
787
Host Sequence
Chromosome
chr7
Cytoband
q35
Reference genome
End
143809744/144112651 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10399/Upstream/729851; hsa-mir-153-2/Downstream/3265366;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/210318, chr7-CpG: 59/Downstream/82830
Upstream sequence
tgagcgtgaaaacccaatcatcacgctcttgaaccacaaaaggatGGAGATGAAATTTTTTTGAAACATGTAAAAGTAGAAAGAAAAAATTTAAAAAATC
Downstream sequence
TTGATGAAATAATTTAGGAGTAAAAGGGAATAAGATACGGAAAGCTTTAGATCAATACTAAACTGTGTAAAAAACCCTAAAATATATTAAAGCTTTAGGA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13