VISDB Viral Integration Site DataBase

VIS ID

TVIS10018169

Fusion event

HBV-chr9 integration

Validated

No

Detection method

RNA-Seq

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2017

PubMed ID

Virus name

HBV

Reference genome

Not given

Start

1801

Chromosome

chr9

Cytoband

q34.2

Reference genome

Start

End

137034290/134169168 (Hg38)

Location type

Intronic

Target gene

RNU6ATAC ; WDR5

miRNAs that regulate target gene

hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-30c-5p ; hsa-mir-3189-5p ; hsa-mir-5699-5p ; hsa-mir-4758-3p ; hsa-mir-6865-3p

Nearest miRNA

hsa-let-7a-1/Upstream/1111952; hsa-mir-126/Downstream/210243;

Nearest TSS

Nearest CpG islands

chr9-CpG: 163/Target, None/Upstream, None/Downstream

Upstream sequence

TGACTTCCCACCATGTGATGCAATGATCATCTTGCTGGATTTCTGTGATGAGAGAGGGATGCTGTGGTATAGAATAAACATGGAAATGGGTCTTGGGAAA

Downstream sequence

ggattgtaccgaactgtagaaatacagtactgtttttttttcctatacatacatacctatgataaagctaggcacagtaagagattaacagtaattacta

Target sequence

GAAGATGAACGGAAAAGCCCCAAGCAGCGGCGGAACGGCGCGCCCGTGCACAAGTGCGACCCGCGCCCGTGTCCCAAGGAAAGAAGATAAAAGATAAAACGAAAAATGCCCCGGGGCTTTgcggtgactcacgcctgtaatccccgcactttgggaggccgaagcgggcggatcacctgaggtcaggagttcaagaccagcctggccaacatagcgaaacctcgtctctactaaaattacaaaaaaattagtcgg