Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018174
Fusion event
HBV-ACOXL integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
573
Host Sequence
Chromosome
chr2
Cytoband
q13
Reference genome
End
111572783/110815206 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1285-2/Upstream/530263; hsa-mir-10b/Downstream/505807;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/81899, chr2-CpG: 536/Downstream/302423
Upstream sequence
TGAGTGAGAGGAGGCTAGGGCTCGGGGGTTCCTCTGCCTCTCAGGGTCTGAGACACCTGTTCAGAGGGCCCGGCCACCTCCCACCAACTCCTCCCACTCA
Downstream sequence
gaacagcaacatgagggaaactgcccccgtgattcaattacttcccaatgtgtccctcctacaacacatggaaattatgggaactataattcaagatgag
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13