hsa-mir-3691-3p _LIHC.png
ARL4D _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018175
Fusion event
HBV-ARL4D integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1434
Host Sequence
Chromosome
chr17
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
41477603/43400235 (Hg38)
End
41477603/43400235 (Hg38)
Location type
Intronic
Target gene
ARL4D
miRNAs that regulate target gene
hsa-mir-4452 ; hsa-mir-183-3p ; hsa-mir-219a-2-3p ; hsa-mir-219b-3p ; hsa-mir-4635 ; hsa-mir-5680 ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-186-3p ; hsa-mir-3691-3p ; hsa-mir-6729-3p ; hsa-mir-4733-5p ; hsa-mir-224-5p
Nearest miRNA
hsa-mir-1180/Upstream/576292; hsa-mir-10226/Downstream/44571;
Nearest TSS
ENST00000595228/Upstream/1276; ENST00000588060/Downstream/44472;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/121, chr17-CpG: 28/Downstream/83437
Upstream sequence
ccagaattccagcagcctgcccagatcacacagctggaactggtgggcatggattGAGTCACGTGGCTCTCAATCAAACTGCCTCCCAATACAAAGACTA
Downstream sequence
CAGCGCTGTGGACGGTCTGGGCCTGCAGCAGGGCCTTGAGCGCCTCTATGAGATGATCCTCAAGAGGAAGAAGGCAGCTCGGGGTGGCAAGAAGAGACGG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate