Basic Information
VIS ID
TVIS10018177
Fusion event
HBV-chr9 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1826
Host Sequence
Chromosome
chr9
Cytoband
q34.11
Reference genome
GRCh37/hg19
Start
132118062/129355783 (Hg38)
End
132118062/129355783 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/963069; hsa-mir-12126/Downstream/513822;
Nearest TSS
ENST00000422679/Upstream/13940; ENST00000439014/Downstream/82433;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/3359, chr9-CpG: 67/Downstream/27514
Nearby gene
LINC01503(-8306) ; LOC107987038(+9225) ;
Upstream sequence
CTAAATGGGAGGAAAGGTTACAGAGGCAGAGGGAGCTGAGGACATCAAGGTATTTTCAAGCAAAGGAGAGAATGCATGTGTCTCTTTCCACTCCACTTAC
Downstream sequence
AGAGGACACGATCTTTCTCAGAGAGTACCAGACCCGGTGAGAGCCCCCATTCCAATGCACCCCCATCTCAGCTTCTGGCCAGAAGACCTGAGCAAGTCCC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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