Basic Information
VIS ID
TVIS10018178
Fusion event
HBV-chr1 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
3120
Host Sequence
Chromosome
chr1
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
188714517/188745386 (Hg38)
End
188714517/188745386 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA1K
Nearest miRNA
hsa-mir-101-1/Upstream/8306996; hsa-mir-1182/Downstream/3970942;
Nearest TSS
ENST00000473358/Upstream/34506; ENST00000445072/Downstream/142048;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/2064437, chr1-CpG: 56/Downstream/4063116
Upstream sequence
TGTGTTAGGCGACCGGAGAGGTGGGTTCCTTATAGGGAATAAGAAAACTGAAACTGACTTCCAACTGCAGGCAGAAGGAAGCAGTGGTCATTGCTGGAGG
Downstream sequence
AACTAAAACCTTATGTTAATGGAAATGTGCTGTTATAAAAGGGCATACAATGGCAATTATATAACCTGAATTGGCATAAAAATTAATTGTCTTTTTCAAA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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