Basic Information
VIS ID
TVIS10018179
Fusion event
HBV-chr3 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
735
Host Sequence
Chromosome
chr3
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
154452306/154734517 (Hg38)
End
154452306/154734517 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA3D
Nearest miRNA
hsa-let-7g/Upstream/3168522; hsa-mir-1224/Downstream/4548129;
Nearest TSS
ENST00000440867/Upstream/195208; ENST00000497890/Downstream/126500;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/305341, chr3-CpG: 60/Downstream/345092
Upstream sequence
TTGGCAAGGAGCCCTGCTCATGTCCTTCCAACACTTTCAGTCTCTTAGGAAGTCAGTTCATGCTGACTTGAATGAGTCACTTGCATAGTCTAGAAATGTT
Downstream sequence
ACTGAAAGCCAGACAGTGGAGTACAGTGGGTAGTTTCCTATGGTGGGTAATTTTGTGTAAGAAAAATAAAAATTTTTCCATCTTCTTTTGTTAATGAAAC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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