Basic Information
VIS ID
TVIS10018181
Fusion event
HBV-LOC105374946 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
832
Host Sequence
Chromosome
chr6
Cytoband
p23
Reference genome
GRCh37/hg19
Start
15145768/15145537 (Hg38)
End
15174824/15174593 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA6A
Target gene
LOC105374946
Nearest miRNA
hsa-mir-3691/Upstream/4705743; hsa-mir-10398/Downstream/966963;
Nearest TSS
ENST00000381078/Upstream/55534; ENST00000474854/Downstream/70407;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/934024, chr6-CpG: 113/Downstream/70053
Upstream sequence
TTAATGTTACAAGAAAAAGTTATTAGACTCTCATAATTGTAAGATGTTTTCCAGGGAAAAGATTCAAATAGAACCTGATACCTTATTGACTTGTTTGAGG
Downstream sequence
GGGGTTTTTTTTTtaacaaaaaaactttcatatcataaactattcactaagtgttgaaattttctcataaatatcaaaaattttgttcagtttgcttgca
Target sequence
AAATCCCAACAAAACAAAACGTAAGCTCACACCAGTTCATCTCCTCATGAAGTATAACCTCTAATGCAGTATCACGCTCATTTTCCATGACTTACCTGTTATGAGCACACATTATTCCATTATTAAACACTAAAGGAAACAGAGGACCTACTAGGCAAGAAGAGTTTTCAGACTGTTAAGTGGCTGGAAGGTTGCCTGGTCCTTGCGCCCGTTAAAAGACTGCACAAAAAGTCAGCACGTCCTAACTGCATTGCA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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