Basic Information
VIS ID
TVIS10018182
Fusion event
HBV-chr6 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
575
Host Sequence
Chromosome
chr6
Cytoband
q21
Reference genome
GRCh37/hg19
Start
112793372/112472170 (Hg38)
End
112793372/112472170 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA6F
Nearest miRNA
hsa-mir-10398/Upstream/5687950; hsa-mir-1202/Downstream/6596877;
Nearest TSS
ENST00000381078/Upstream/124840; ENST00000415883/Downstream/9466;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/104642, chr6-CpG: 205/Downstream/1386388
Upstream sequence
AACAATTCATTCCAGTAGTTCCTGAGGCCCAGGGCATCAACAAGAGATCAGAACTATATGGAATAAGCCCACAATGTTGAAAAATTTAGGCTGAATGGAA
Downstream sequence
TTGAACAGCAACATGAGGGAAATTGGTTTCCTCTAATCTTCCACATAAGGAGGCAATCTCTTTATATGCAAGTAAAGGATTTTGCATATTGATTGCATTT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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