Basic Information
VIS ID
TVIS10018185
Fusion event
HBV-PCAT29 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
830
Host Sequence
Chromosome
chr15
Cytoband
q23
Reference genome
GRCh37/hg19
Start
69966040/69673701 (Hg38)
End
69966040/69673701 (Hg38)
Location type
Intronic
Target gene
PCAT29
Nearest miRNA
hsa-mir-10393/Upstream/871776; hsa-mir-11181/Downstream/405671;
Nearest TSS
ENST00000557528/Upstream/1953; ENST00000558385/Downstream/149155;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/220294, chr15-CpG: 21/Downstream/360152
Upstream sequence
TTAGAACAGGAACCTGCCTCTGTGGCGATAAGCACACAATGAACGCAGTCAGTGCCCACAGACCAGTTGAAAATGGAAAGCCTCAGACTTGCTTTGTGCT
Downstream sequence
TTAAATCCCATCAAAACAAAAAAATAAAGAAATAAGGAAGCGCTATAGTACATTGTTTTGCTTCGTTTTTAATTTGAACTTTTTAGTAATAACACAAATG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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