Basic Information
VIS ID
TVIS10018187
Fusion event
HBV-chrX integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1798
Host Sequence
Chromosome
chrX
Cytoband
p22.13
Reference genome
GRCh37/hg19
Start
18893567/18875449 (Hg38)
End
18893567/18875449 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-3690-1/Upstream/1449495; hsa-let-7f-2/Downstream/1141639;
Nearest TSS
ENST00000429181/Upstream/57354; ENST00000452900/Downstream/14847;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/199970, chrX-CpG: 130/Downstream/108436
Nearby gene
HAUS1P2(-8698) ;
Upstream sequence
tacatattcacatacatatatagtatacCAACTTATAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTTCTTCCTCTAATTTCTCTAATTCTACCATTTA
Downstream sequence
ACACTGATCACATAAGCTTGTGAGCATTCAGCGCTGAAGGCCAAGGATGCCTTGTGCTCTGAGAATGGGATCTGCTTGGGGGCAGGAGAGACTTGGGGTC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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