KIDINS220 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018190
Fusion event
HBV-KIDINS220 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
534
Host Sequence
Chromosome
chr2
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
8906551/8766421 (Hg38)
End
8906551/8766421 (Hg38)
Location type
Intronic
Target gene
KIDINS220
miRNAs that regulate target gene
hsa-mir-192-5p ; hsa-mir-30a-5p ; hsa-mir-16-5p ; hsa-let-7b-5p ; hsa-mir-423-3p ; hsa-mir-4638-5p
Nearest miRNA
hsa-mir-7158/Upstream/2115982; hsa-mir-10b/Downstream/1426193;
Nearest TSS
ENST00000437798/Upstream/29132; ENST00000565044/Downstream/4286;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/80363, chr2-CpG: 51/Downstream/70822
Upstream sequence
cgtggccaagaaggaagtccattcagatggttggggggacttagaattttatttttggtttacaTAAGGAAGGTAAAAGAAGGACCATGACAAAACTAAA
Downstream sequence
ttcatctccttaactctcttctaccttttattctttccaccacacttgctgcctttaacatgctaattatgtattatatatgttgtttattacccatcac
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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