hsa-mir-3944-5p _LIHC.png
MAGI2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018192
Fusion event
HBV-MAGI2 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
875
Host Sequence
Chromosome
chr7
Cytoband
q21.11
Reference genome
GRCh37/hg19
Start
78922167/79292851 (Hg38)
End
78922167/79292851 (Hg38)
Location type
Intronic
Target gene
MAGI2
miRNAs that regulate target gene
hsa-mir-655-3p ; hsa-mir-487b-3p ; hsa-mir-134-5p ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-3944-5p ; hsa-mir-5690 ; hsa-mir-4660 ; hsa-mir-4704-5p ; hsa-mir-3912-5p ; hsa-mir-487a-3p
Nearest miRNA
hsa-mir-10525/Upstream/3377582; hsa-mir-10399/Downstream/12911164;
Nearest TSS
ENST00000635602/Upstream/153022; ENST00000442586/Downstream/59034;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/1252111, chr7-CpG: 26/Downstream/159398
Upstream sequence
TCAGGTTACATACCCTGCAGCCCCACAATAACAACATTAACCGGTGTGTTTTAGGctttacagtttacaaaggctttctcagacactatcccatatgCTG
Downstream sequence
aatttagggaatattcccatcttaattaagtcttcGGCTTCCTCTGTTTTCTTCTGCCACTGCTGGGTGTTGCTTGCCATTACCTCCAACCTACATTACT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate