Basic Information
VIS ID
TVIS10018195
Fusion event
HBV-chr11 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1815
Host Sequence
Chromosome
chr11
Cytoband
p12
Reference genome
GRCh37/hg19
Start
42532839/42511289 (Hg38)
End
42532839/42511289 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1343/Upstream/6501085; hsa-let-7a-2/Downstream/1048367;
Nearest TSS
ENST00000527297/Upstream/257577; ENST00000530300/Downstream/800674;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/6000822, chr11-CpG: 49/Downstream/800600
Upstream sequence
CCCAGCTAAGGTTCTACCTTAGGGGCCACGCCACCTCCCCAGGGAGGGGTCCAGAGGCATGGGGACCTGGGGTGCCCCTCACAGGACACTTCCTTGCAGG
Downstream sequence
AACAGAGGTGCCATGCAGCCCCGGGTACTCCTTGTTGTTGCCCTCCTGGCGCTCCTGGCCTCTGCCCGTAAGCACTTGGTGGGACTGGGCTGGGGGCAGG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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