ZFPM2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018196
Fusion event
HBV-ZFPM2 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
2696
Host Sequence
Chromosome
chr8
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
106473002/105460774 (Hg38)
End
106473002/105460774 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA8A
Target gene
ZFPM2
miRNAs that regulate target gene
hsa-mir-141-3p ; hsa-mir-200a-3p ; hsa-mir-200b-3p ; hsa-mir-200c-3p ; hsa-mir-429 ; hsa-mir-26b-5p ; hsa-mir-184
Nearest miRNA
hsa-mir-12123/Upstream/976309; hsa-mir-10400/Downstream/7182719;
Nearest TSS
ENST00000518652/Upstream/41630; ENST00000517361/Downstream/68110;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/140882, chr8-CpG: 19/Downstream/754783
Upstream sequence
TTCTATAAAACATGAATTTGTCTCTATAATATAGAAATAAATCTTTAAATGGGTAGGGATAAAAGATAGTCAAACATAGGCAACAATGCAGAAAGGTAAT
Downstream sequence
CTTATTATCCTGAAAAGAAAAAAAAAATGCTCCATGCATTGTGaaaaaatactttaactattttaacttattaaatgtaacaattattttatattctata
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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