Basic Information
VIS ID
TVIS10018212
Fusion event
HBV-LOC107985365 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1021
Host Sequence
Chromosome
chr1
Cytoband
q42.3
Reference genome
GRCh37/hg19
Start
234959744/234823997 (Hg38)
End
234959744/234823997 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1H
Target gene
LOC107985365
Nearest miRNA
hsa-mir-101-1/Upstream/517458; hsa-mir-1537/Downstream/366037;
Nearest TSS
ENST00000473358/Upstream/63941; ENST00000423963/Downstream/133234;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/212719, chr1-CpG: 30/Downstream/280242
Upstream sequence
CACCCCTGGGTTCAGACTTCTGTGGGACCTCTCATCTTCCCTTCTTTCTCTCCACAGTTCCACAGCCCCTGAACCCCTTGCCCTGAGACTTACTTGGCCT
Downstream sequence
TCCATAGCTATGGATAGCTTCAGTAACAAGCCACATGTAAagcctagtttggtctcttgaactccagacccatacttccaaatgcctCctgactctcctc
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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