Basic Information
VIS ID
TVIS10018217
Fusion event
HBV-chr3 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
2147
Host Sequence
Chromosome
chr3
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
118049623/118330776 (Hg38)
End
118049623/118330776 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/1480409; hsa-mir-12124/Downstream/1753788;
Nearest TSS
ENST00000440867/Upstream/333184; ENST00000477009/Downstream/226891;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/333059, chr3-CpG: 98/Downstream/703469
Upstream sequence
CCACAAAGGAAACCTGAGGCTTTTCTGCATTCAGGCCTTTACTCTGAATCTACGGATGCATTGATATTGGTATCATTACTATCATCATTATTTCCTTCAT
Downstream sequence
ataatattaaacaatcatgtaaaaattgtagtgtaatattgacaatgcagttgttatttttaaagttcatatctgttagaaatacatgttacagtattta
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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