Basic Information
VIS ID
TVIS10018221
Fusion event
HBV-chr4 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
2502
Host Sequence
Chromosome
chr4
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
156164855/155243703 (Hg38)
End
156164855/155243703 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/2707187; hsa-mir-1305/Downstream/3885099;
Nearest TSS
ENST00000502981/Upstream/34676; ENST00000602249/Downstream/32986;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/34646, chr4-CpG: 54/Downstream/132746
Upstream sequence
GATTGCTAGGGAAATAGATCTCTCTGTCACGAATGCATAAATACATTTGCATAAATGCATAAAGTACATTTCAGTAGTGACTCACCAGGAAACTGTTGAT
Downstream sequence
AGTACCTATCTTTAATCCTGAGTTGTTATATTAAAGTCTTGCTTTAATGTGATGTAAACATTTTCAGTTTCTTTATACTAAAATTCTTCTTATTATTCAA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate