Basic Information
VIS ID
TVIS10018222
Fusion event
HBV-chr5 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
832
Host Sequence
Chromosome
chr5
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
35464903/35464801 (Hg38)
End
35464903/35464801 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA5A
Nearest miRNA
hsa-mir-10397/Upstream/3070326; hsa-mir-103a-1/Downstream/683091;
Nearest TSS
ENST00000502646/Upstream/234212; ENST00000505088/Downstream/153043;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/534465, chr5-CpG: 33/Downstream/152952
Upstream sequence
cacacacagagacacacacTGAGTCATGGTGACAAAGTCCACACAAATGGTTAATCATTGAGTTCAAAGTTTTTTTCCACTATGGCAATCAAAACCAACA
Downstream sequence
aaaccctaacaaaacataaataaataaagccaggatactaaggtgggagggcacttatgcacacctacctatgataagaactgttacagagactCTCTGC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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