Basic Information
VIS ID
TVIS10018223
Fusion event
HBV-chr6 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1120
Host Sequence
Chromosome
chr6
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
133280952/132959813 (Hg38)
End
133280952/132959813 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/844550; hsa-mir-1202/Downstream/2019525;
Nearest TSS
ENST00000381078/Upstream/145244; ENST00000434443/Downstream/128267;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/145123, chr6-CpG: 138/Downstream/281135
Nearby gene
LOC105378008(-1628) ;
Upstream sequence
AAATATTGGCCAAATTATTCATTTTGTTAGGACTTGGGGTAGAAAAATATTTTGAAGAAATGCAATGATAGATTGTTAATTTGAGTCTGATTTGAATTTC
Downstream sequence
TTCCTCACTGACTGTGCTTTAGACTTCAGAGTCCAAATGTGAATCGTTCCAGTTACAAACATATTTTACTGTTTTCCTTCATACTcacactcacacacac
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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