Basic Information
VIS ID
TVIS10018224
Fusion event
HBV-PRRT1B integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
49
Host Sequence
Chromosome
chr9
Cytoband
q34.13
Reference genome
GRCh37/hg19
Start
134429094/131553707 (Hg38)
End
134429094/131553707 (Hg38)
Location type
Intronic
Target gene
PRRT1B
Nearest miRNA
hsa-let-7a-1/Upstream/927344; hsa-mir-126/Downstream/1392000;
Nearest TSS
ENST00000422679/Upstream/8193; ENST00000444708/Downstream/68131;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/21921, chr9-CpG: 93/Downstream/772
Upstream sequence
GGAAAAGGAGGTCCATTTGTAGTTATAGTATAATTGAAAAGAAAAGCTCTGAAGAAAACTCTAGCCTACTCTTTTTCAGCCCAAGGGGAAGGCAGAGCAC
Downstream sequence
CTTATATTCCAGATTTAGGGCTTGAATTTTTTGAAGACATGAAAAGTAGATGAAAGAATAATAAACAGTAAGAGTTTTAAAATGTCATCTTCTTGTTTAG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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