Basic Information
VIS ID
TVIS10018225
Fusion event
HBV-chr15 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1727
Host Sequence
Chromosome
chr15
Cytoband
q26.2
Reference genome
GRCh37/hg19
Start
96363322/95820093 (Hg38)
End
96363322/95820093 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/2915618; hsa-mir-1302-10/Downstream/513168;
Nearest TSS
ENST00000557528/Upstream/181599; ENST00000560176/Downstream/170489;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/493000, chr15-CpG: 151/Downstream/501559
Upstream sequence
CTATTCTTGGAAGGCATTTGCAAGTCAAAAATATGGTGCATGGAGATCTGATGTCGACTTCACATTCTGAAGATTTCAGCTAGGTCAGCATTATTTTATG
Downstream sequence
CTTAAACACATAGTCTTTGAAAAAATTCCCTTGGAATTCTATGCTCCTAAACAGTTCAGCAGCACAAGCTTTCATCTTACATTTTATTTTTTTTCCATGA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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