PDZRN3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018235
Fusion event
HBV-PDZRN3 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
2549
Host Sequence
Chromosome
chr3
Cytoband
p13
Reference genome
GRCh37/hg19
Start
73652513/73603362 (Hg38)
End
73652513/73603362 (Hg38)
Location type
Intronic
Target gene
PDZRN3
miRNAs that regulate target gene
hsa-mir-197-3p
Nearest miRNA
hsa-let-7g/Upstream/2061273; hsa-mir-12124/Downstream/1611114;
Nearest TSS
ENST00000440867/Upstream/33901; ENST00000608743/Downstream/18351;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/218440, chr3-CpG: 151/Downstream/20717
Upstream sequence
TACAGAATACAAAAGACTGTTTCTAGTTTACAATGCTGTGACTTCTCTTTCTACCACAGAATATGCTGGTTTATATGATGACATCTCCACTCAAGGCTGG
Downstream sequence
AAATCAAAAGGCTCCAACAAGCTCATAAAAAACCCTCACAGCTTGTTCACGAACTTCTTTTCAAACAGCACTGCAATGAATTCTCTCCAAGTGTACGGAT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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