RASSF3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018236
Fusion event
HBV-RASSF3 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1499
Host Sequence
Chromosome
chr12
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
65006013/64612233 (Hg38)
End
65006013/64612233 (Hg38)
Location type
Intronic
Target gene
RASSF3
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-18a-5p ; hsa-mir-20a-3p
Nearest miRNA
hsa-let-7i/Upstream/788506; hsa-mir-1178/Downstream/10276;
Nearest TSS
ENST00000382841/Upstream/1711; ENST00000434563/Downstream/42786;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/1114, chr12-CpG: 57/Downstream/146856
Nearest cancer related gene
RASSF3(TSG, No orient, 0)
Upstream sequence
ATGGGCTCATGTATCTTTCAGCAAGGTTTTAAAGTGCTTTTCCTCTCCAGCAGTTCACATGTTGCATAGGTTAGCAAGAGTCCAAAGATATCATACCACT
Downstream sequence
GAACTAGACGGAGACCTCTGCCATCGCAATCACGATTCAGGCACCACACTGAATGGACCAGAGTGGAGATTTGGGCCCTTTATGGACTGAATCAAATACA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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