Basic Information
VIS ID
TVIS10018237
Fusion event
HBV-ARHGAP44 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1770
Host Sequence
Chromosome
chr17
Cytoband
p12
Reference genome
GRCh37/hg19
Start
12890676/12987359 (Hg38)
End
12890676/12987359 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA17A
Target gene
ARHGAP44
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-30c-5p
Nearest miRNA
hsa-mir-1253/Upstream/70017; hsa-mir-10226/Downstream/556170;
Nearest TSS
ENST00000595228/Upstream/2870; ENST00000607906/Downstream/3251;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/12903, chr17-CpG: 74/Downstream/30280
Upstream sequence
CAAAAAGCAGAGGGTGGGTAAGGCCACAGGGCTGGCCCAGACTTGGGCGCTGTGAACTTGTTCTTGCATTCACTGTAAGGAGCTACAGATGATGCTGGAC
Downstream sequence
ATTAGGAGGAGCTGGGGGAGAACCCAGCCAGCCCCTTTCCCCCACCTTCTCTTTCACTGGAATCACATCTGCAGCTCCTCCCCCTCCGCCCTCCCTCAGG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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