Basic Information
VIS ID
TVIS10018238
Fusion event
HBV-CFAP70 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1771
Host Sequence
Chromosome
chr10
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
75041785/73282027 (Hg38)
End
75041785/73282027 (Hg38)
Location type
Intronic
Target gene
CFAP70
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-1265/Upstream/560927; hsa-mir-107/Downstream/2270431;
Nearest TSS
ENST00000439456/Upstream/28858; ENST00000427492/Downstream/9708;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/29254, chr10-CpG: 36/Downstream/76420
Upstream sequence
CCATCACATCTTGATAAGTTATCAATTCTGTCTTCTCCAGAGGATGACATTAGTAATTGAAACCTTATCAGTCTCATTGTTTTCCTTCATGAAGATATAA
Downstream sequence
CCtttattatttttaattgaaaaataataaGTGGAATTGTGTAGTTTATAGCATAGCAACTAAAACATCTGGATGAATACAGAAACCATGTGATAGACAG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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