KCNC2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018243
Fusion event
HBV-KCNC2 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1731
Host Sequence
Chromosome
chr12
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
75454741/75060961 (Hg38)
End
75454741/75060961 (Hg38)
Location type
Intronic
Target gene
KCNC2
Nearest miRNA
hsa-let-7i/Upstream/5476138; hsa-mir-1178/Downstream/4358296;
Nearest TSS
ENST00000382841/Upstream/10034; ENST00000548779/Downstream/79235;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/522862, chr12-CpG: 68/Downstream/146340
Upstream sequence
ATGGGCTCATGTATCTTTCAGCAAGGTTTTAAAGTGCTTTTCCTCTCCAGCAGTTCACATGTTGCATAGGTTAGCAAGAGTCCAAAGATATCATACCACT
Downstream sequence
GAACTAGACGGAGACCTCTGCCATCGCAATCACGATTCAGGCACCACACTGAATGGACCAGAGTGGAGATTTGGGCCCTTTATGGACTGAATCAAATACA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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