VISDB Viral Integration Site DataBase

VIS ID

TVIS10018249

Fusion event

HBV-FN1 integration

Validated

No

Detection method

RNA-Seq

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2017

PubMed ID

Virus name

HBV

Reference genome

Not given

Start

2275

Chromosome

chr2

Cytoband

q35

Reference genome

Start

End

216252427/215387704 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-1-3p ; hsa-let-7g-5p ; hsa-mir-26b-5p ; hsa-mir-615-3p ; hsa-mir-218-5p ; hsa-mir-140-3p

Nearest miRNA

hsa-mir-10b/Upstream/1625326; hsa-mir-1244-1/Downstream/2512809;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/71076, chr2-CpG: 43/Downstream/47840

Upstream sequence

CAGGAGGAGCCTCGTTCACAGCCTCAGACTTATGCTCCATTTTTTTTTTAATCCTTGGACACAGGAACTTTGGCCCAGAGGcttgtttgcatgtcagaat

Downstream sequence

ATAAATAAATTAATGAATACACTAAAGTGTACCTTTTGAAAGAAAAAATTAAAAGCATTCATATTTAAGTATGTAATATTTATGAGATTCAATTCAACTT

Target sequence

ACAAATAAAAGCAGGGAGAAACCAGTGAAGCCCCAGTCCTTGGAGACAAGATTGGACAAGTCCTCCTCTCTAGGTCTGGTACATATTCGAATGATCGCTTACATGAGAAAGGTATTTCTTCTCGAAAGAATACAGAGAGAGCTTTTAGAGGGATGGGGCAGGCATCTCAATACCATTTCCTATTTTTGAGATGGTTGCTTCATTCACAAAGAAGCTACATTCCACAAGCAGGTGTCTCTTCCTACTTTATCAACT