Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018253
Fusion event
HBV-GRIN3A integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1828
Host Sequence
Chromosome
chr9
Cytoband
q31.1
Reference genome
End
104363085/101600803 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-let-7a-1/Upstream/3371586; hsa-mir-12126/Downstream/5000125;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/66853, chr9-CpG: 115/Downstream/136764
Upstream sequence
GGATCCCCTTTCCATTGGCAACAATGCTCTGGGCAATTTCTGAGAGCTCCTTCTTCTGCTCCTGGGTGAGGGCTGGAAATCGGTGGGCCATGGTGACAGG
Downstream sequence
CCAACAAGCCCACATGGGGAGGGGCATTACGGGCAGAAGAAGGACCCGGATGCAGTGCTGGCCAGATGACAGAGCAAGGGGCATCTGGGGAGTGGCGAAA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13