Basic Information
VIS ID
TVIS10018255
Fusion event
HBV-chr5 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1638
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
4193005/4192892 (Hg38)
End
4193005/4192892 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-4277/Upstream/2484024; hsa-mir-10397/Downstream/2634961;
Nearest TSS
ENST00000502646/Upstream/57210; ENST00000503188/Downstream/247367;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/230494, chr5-CpG: 39/Downstream/673312
Upstream sequence
TGGGTTATGAATATGTGTGGCTGATACACAGTTTGGGTAAATCTTTGAATGAAGTTTGAGTCCTGTGCAACAATCTGCACTGTTCATTGTGAAATGTGGC
Downstream sequence
CAGTTTATTAGTCTCTCTAACCACCCAAAGTAATCCTCAAGGTTCCTTTTGAGTAAAATTCCCGGCATTGAATGATAGAAAATATTATTAAGCTGCTTTA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate