Basic Information
VIS ID
TVIS10018257
Fusion event
HBV-LOC105370265 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1813
Host Sequence
Chromosome
chr13
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
77289004/76714869 (Hg38)
End
77289004/76714869 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA13E
Target gene
LOC105370265
Nearest miRNA
hsa-mir-1297/Upstream/10496545; hsa-mir-1267/Downstream/983143;
Nearest TSS
ENST00000623511/Upstream/700368; ENST00000646457/Downstream/118970;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1077792, chr13-CpG: 195/Downstream/170318
Upstream sequence
acactcttcttaacatcctgttgtggaattttgcctagttctcagtaatatacttaaaggatgctttcttctgcatctccttggcccctgagttccaaga
Downstream sequence
actgtgtgtttaatgagtgggaaaaattggactctaacactaaatgtcagtattgtcagaccatgcttccctagggaattaaaaactctcccaccctttt
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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