Basic Information
VIS ID
TVIS10018258
Fusion event
HBV-chr21 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1776
Host Sequence
Chromosome
chr21
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
29725707/28353387 (Hg38)
End
29725707/28353387 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7c/Upstream/1399344; hsa-mir-3197/Downstream/2021907;
Nearest TSS
ENST00000624081/Upstream/124720; ENST00000412526/Downstream/185931;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/1209400, chr21-CpG: 29/Downstream/531716
Upstream sequence
TATCAAGGATGAATGAGCTCATTAGTTCCACAGTAAGCAATTCTTCTCCCTCAAAGCAtcttattttaaaatactccacatcccttgtaagttggattcc
Downstream sequence
taggtattttattctctttgaagcaattgtgaatgggaattgactcatgatttggctctctgtttgtctgttgttggtgtgtaagaatgcttgtgatttt
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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