KCTD8 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018259
Fusion event
HBV-KCTD8 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1793
Host Sequence
Chromosome
chr4
Cytoband
p13
Reference genome
GRCh37/hg19
Start
44210710/44208693 (Hg38)
End
44210710/44208693 (Hg38)
Location type
Intronic
Target gene
KCTD8
Nearest miRNA
hsa-mir-12113/Upstream/3706574; hsa-mir-1243/Downstream/3443976;
Nearest TSS
ENST00000502981/Upstream/191631; ENST00000513775/Downstream/238920;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1551160, chr4-CpG: 174/Downstream/238676
Upstream sequence
GCCTGGAGATGCTGTGATTCCACCACCCAGATGGGAATAGTGAGACCAGAGTCCTATTAAAGTCATGTTAAGATGAtccctctttgctccttccctttct
Downstream sequence
GCCCTGCCCTTCAATTCATATGTCCTCATAATACTCAACTGGAATCTCCCCTACCTATAGATACTGTAAATACTAAGTAAAGCAAAGGCTGCATCATTAC
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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