Basic Information
VIS ID
TVIS10018264
Fusion event
HBV-FLACC1 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
98
Host Sequence
Chromosome
chr2
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
202211466/201346743 (Hg38)
End
202211466/201346743 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA2I
Target gene
FLACC1
miRNAs that regulate target gene
hsa-mir-1236-3p
Nearest miRNA
hsa-mir-10b/Upstream/12213632; hsa-mir-1244-1/Downstream/5436491;
Nearest TSS
ENST00000437798/Upstream/37494; ENST00000488196/Downstream/1558;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/227757, chr2-CpG: 110/Downstream/104387
Upstream sequence
AAACTGTGCCAGCTTCCTGGCAGGCTCGGGAGGGCAGGGAGATGCAGGTTCCCGCAGCTCACAGTAAAGTGTTGTGAACCCACGAAGGACCGCTCCAGGC
Downstream sequence
TATTGCCTCACTCACATCTTAAAAACAGGGACCTGGGACTCCACAGCCCAAGCCCTTCTGGGCCCTTCACCCATTATAGCTCATTCTCACATCTCTCCGA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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