hsa-mir-6744-3p _LIHC.png
hsa-mir-3202 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018269
Fusion event
HBV-chr19 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
760
Host Sequence
Chromosome
chr19
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
45411016/44907759 (Hg38)
End
45452471/44949214 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
APOC1 ; APOC1P1 ; APOC2 ; APOC4 ; APOE ; TOMM40
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-34a-5p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-324-3p ; hsa-mir-199a-5p ; hsa-mir-1908-5p ; hsa-mir-199a-3p ; hsa-mir-328-3p ; hsa-mir-7155-3p ; hsa-mir-3136-3p ; hsa-mir-1245b-3p ; hsa-mir-4538 ; hsa-mir-4453 ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-6878-3p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-6131 ; hsa-mir-4755-3p ; hsa-mir-3663-5p ; hsa-mir-3922-3p ; hsa-mir-3176 ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-1306-3p ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-1268a ; hsa-mir-1268b ; hsa-mir-1908-5p ; hsa-mir-24-3p ; hsa-mir-3190-3p ; hsa-mir-3202 ; hsa-mir-3610 ; hsa-mir-3926 ; hsa-mir-4316 ; hsa-mir-4437 ; hsa-mir-4459 ; hsa-mir-449b-3p ; hsa-mir-4533 ; hsa-mir-4640-5p ; hsa-mir-4710 ; hsa-mir-4721 ; hsa-mir-4726-5p ; hsa-mir-4738-3p ; hsa-mir-4779 ; hsa-mir-4792 ; hsa-mir-5008-5p ; hsa-mir-5088-5p ; hsa-mir-6089 ; hsa-mir-6125 ; hsa-mir-663a ; hsa-mir-665 ; hsa-mir-6762-5p ; hsa-mir-6787-5p ; hsa-mir-6845-5p ; hsa-mir-7855-5p
Nearest miRNA
hsa-mir-10395/Upstream/149038; hsa-let-7e/Downstream/487440;
Nearest TSS
ENST00000633603/Upstream/1399; ENST00000585961/Downstream/4793;
Nearest CpG islands
chr19-CpG: 90/Target, None/Upstream, None/Downstream
Upstream sequence
CAAAGAAGCATTTGTGGAGCACCTTCTGTGTGCCCCTAGGTACTAGATGCCTGGACGGGGTCAGAAGGACCCTGACCCACCTTGAACTTGTTCCACACAG
Downstream sequence
ACCAAGTTCTTTCTGTGCTGAAGGGAGAGGAGTAACAGCCAGACCCCCCATCAGTGGACAAGGGGAGAGTCCCCTACTCCCCTGATCCCCCAGGTTCAGA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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