VISDB Viral Integration Site DataBase

VIS ID

TVIS10018274

Fusion event

HBV-chr1 integration

Validated

No

Detection method

RNA-Seq

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2017

PubMed ID

Virus name

HBV

Reference genome

Not given

Start

2448

Chromosome

chr1

Cytoband

q32.1

Reference genome

Start

End

207105921/206932576 (Hg38)

Location type

Intronic

Target gene

DYRK3 ; FCMR ; IL10 ; IL19 ; IL20 ; IL24 ; LGTN ; MAPKAPK2 ; PIGR ; RASSF5

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-106a-5p ; hsa-mir-205-5p ; hsa-mir-203a-3p ; hsa-mir-335-5p ; hsa-mir-124-3p ; hsa-mir-1-3p ; hsa-mir-26b-5p ; hsa-mir-1229-3p ; hsa-mir-374b-5p ; hsa-mir-877-3p ; hsa-mir-615-3p ; hsa-mir-193b-3p ; hsa-mir-193b-3p ; hsa-mir-324-5p ; hsa-mir-221-3p ; hsa-mir-624-3p ; hsa-let-7c-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-203a-3p ; hsa-mir-513a-5p ; hsa-mir-222-3p ; hsa-mir-221-3p ; hsa-mir-548v ; hsa-mir-187-5p ; hsa-mir-936 ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-5680 ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-3591-5p ; hsa-mir-489-3p ; hsa-mir-4709-3p ; hsa-mir-623 ; hsa-mir-142-3p ; hsa-mir-542-3p ; hsa-mir-4504 ; hsa-mir-449b-5p ; hsa-mir-449a ; hsa-mir-34c-5p ; hsa-mir-34a-5p ; hsa-mir-6894-5p ; hsa-mir-3605-5p ; hsa-mir-4468 ; hsa-mir-605-3p ; hsa-mir-3185 ; hsa-mir-4635 ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-6780b-3p ; hsa-mir-4780 ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-556-5p ; hsa-mir-648 ; hsa-mir-2392 ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-5197-3p ; hsa-mir-3714 ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-6720-5p ; hsa-mir-7703 ; hsa-mir-6512-3p ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-1273a ; hsa-mir-661 ; hsa-mir-4793-3p ; hsa-mir-4486 ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-508-5p ; hsa-mir-3680-5p ; hsa-mir-4789-3p ; hsa-mir-8485 ; hsa-mir-483-3p ; hsa-mir-1231 ; hsa-mir-632 ; hsa-mir-4288 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4743-5p ; hsa-mir-6089 ; hsa-mir-583 ; hsa-mir-8064 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-2467-3p ; hsa-mir-1827 ; hsa-mir-3937 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-4800-5p ; hsa-mir-3138 ; hsa-mir-4252 ; hsa-mir-7114-5p ; hsa-mir-4318 ; hsa-mir-1252-3p ; hsa-mir-3646 ; hsa-mir-133a-3p ; hsa-mir-4713-5p ; hsa-mir-642a-5p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-4281 ; hsa-mir-7152-3p ; hsa-mir-1236-3p ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-877-3p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-1224-3p ; hsa-mir-3620-3p ; hsa-mir-504-5p ; hsa-mir-3156-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-188-3p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5696 ; hsa-mir-1224-3p ; hsa-mir-95-5p ; hsa-mir-194-5p ; hsa-mir-98-5p ; hsa-mir-19a-3p ; hsa-mir-34a-5p ; hsa-mir-214-5p ; hsa-mir-503-3p ; hsa-let-7a-5p ; hsa-let-7b-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-1207-5p ; hsa-mir-1233-5p ; hsa-mir-1253 ; hsa-mir-1288-5p ; hsa-mir-1827 ; hsa-mir-1909-3p ; hsa-mir-202-3p ; hsa-mir-2682-5p ; hsa-mir-3196 ; hsa-mir-34b-5p ; hsa-mir-3927-3p ; hsa-mir-4300 ; hsa-mir-4458 ; hsa-mir-4468 ; hsa-mir-4492 ; hsa-mir-4498 ; hsa-mir-449c-5p ; hsa-mir-4500 ; hsa-mir-4651 ; hsa-mir-4763-3p ; hsa-mir-483-5p ; hsa-mir-5001-5p ; hsa-mir-548au-3p ; hsa-mir-5591-5p ; hsa-mir-5694 ; hsa-mir-6081 ; hsa-mir-608 ; hsa-mir-6090 ; hsa-mir-6722-3p ; hsa-mir-6726-5p ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6778-5p ; hsa-mir-6782-5p ; hsa-mir-6820-5p ; hsa-mir-6827-5p ; hsa-mir-6831-5p ; hsa-mir-762 ; hsa-mir-920 ; hsa-mir-98-5p ; hsa-mir-3128 ; hsa-mir-4720-5p ; hsa-mir-4799-3p ; hsa-mir-5588-5p ; hsa-mir-6757-3p ; hsa-mir-6868-5p

Nearest miRNA

hsa-mir-101-1/Upstream/52704; hsa-mir-1182/Downstream/869276;

Nearest TSS

Nearest CpG islands

chr1-CpG: 60/Target, None/Upstream, None/Downstream

Nearest cancer related gene

RASSF5(TSG, No orient, 0)

Upstream sequence

CTGGATATAAGAGCACAGGCAGATAGGTAGCTATAACCACCAGCACATTCTCCCTTTTGGCCCCCTCTCCATATCACACCCACCTTCAAGGCTGCAGATG

Downstream sequence

GCTGGAAGAAGGCTTAAGTTAGTTCATCCCTGGAAGGGAGATCTGGGGGCCCGACGATGTGCTGGCAAGGTTGGCTTAGTCCTTTTTCCTCCCAGGTTTA