Basic Information
VIS ID
TVIS10018277
Fusion event
HBV-chr1 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1825
Host Sequence
Chromosome
chr1
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
161191323/161221533 (Hg38)
End
161191323/161221533 (Hg38)
Location type
Intronic
Target gene
APOA2 ; FCER1G ; TOMM40L
miRNAs that regulate target gene
hsa-mir-1225-3p ; hsa-mir-2909 ; hsa-mir-513a-5p ; hsa-mir-1296-5p ; hsa-mir-6508-3p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-330-3p ; hsa-mir-4512 ; hsa-mir-7160-3p ; hsa-mir-6895-5p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-let-7a-5p ; hsa-let-7b-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-202-3p ; hsa-mir-3155a ; hsa-mir-3155b ; hsa-mir-3921 ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-mir-4645-5p ; hsa-mir-4649-3p ; hsa-mir-4653-5p ; hsa-mir-4673 ; hsa-mir-4677-3p ; hsa-mir-4679 ; hsa-mir-484 ; hsa-mir-5586-5p ; hsa-mir-7162-3p ; hsa-mir-760 ; hsa-mir-8070 ; hsa-mir-98-5p ; hsa-mir-501-3p ; hsa-mir-502-3p
Nearest miRNA
hsa-mir-101-1/Upstream/1321454; hsa-mir-1182/Downstream/5653;
Nearest TSS
ENST00000473358/Upstream/6236; ENST00000465512/Downstream/1875;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/19067, chr1-CpG: 54/Downstream/37154
Upstream sequence
CCGAACACTGTTGAGCATCTCATGGTATCTGTTGGTGTTGGCATACATCTGTTGGAAAATAGTCGTCACATTCCCGAAGATGGTGGCATAGAGAAGTGCT
Downstream sequence
cgtactggtgcaatcatggctcactgcagcctcgacctcctgggctcaagcagtcctcccacctaagcatcccaagtagcagggattacagccaccttgc
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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