Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018282
Fusion event
HBV-HS6ST3 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1805
Host Sequence
Chromosome
chr13
Cytoband
q32.1
Reference genome
Start
End
97435234/96782980 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-5589-3p ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-574-5p ; hsa-mir-5010-3p ; hsa-mir-147a ; hsa-mir-6818-5p ; hsa-mir-592 ; hsa-mir-513a-5p ; hsa-mir-8068 ; hsa-mir-6867-5p ; hsa-mir-597-5p ; hsa-mir-486-3p ; hsa-mir-6721-5p ; hsa-mir-4445-5p ; hsa-mir-6743-5p ; hsa-mir-4688 ; hsa-mir-6767-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485
Nearest miRNA
hsa-mir-1297/Upstream/355688; hsa-mir-1267/Downstream/1425544;
Nearest CpG islands
Upstream sequence
ataaaaataaaatttaaaattacttaaaaataataaattGGCTTACAAATACAAATTAGCATTATTAAGACAACAATATTAAGAATTATATTTTACTGAA
Downstream sequence
GTTTTTTTctgtgataagagttatttcatacatgagtttattttgtcttcataaatacctatttgatatatgagaaaactgagtcttagaaaggttaagt
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13