Basic Information
VIS ID
TVIS10018287
Fusion event
HBV-chr3 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
916
Host Sequence
Chromosome
chr3
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
135240850/135522008 (Hg38)
End
135240850/135522008 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/1084102; hsa-mir-1224/Downstream/16043868;
Nearest TSS
ENST00000440867/Upstream/389216; ENST00000447251/Downstream/443665;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/724870, chr3-CpG: 47/Downstream/444056
Nearby gene
LOC105374122(-5630) ;
Upstream sequence
AGACAGATTTAGTGCTCCTGGCCTTAGACTCCCCATTAAATATTTAACAGCTTCTACAATAACAATCAATTAATAGCAGGTAGCCCGGAATTTAAACATA
Downstream sequence
atacttaaggcttgccttgttcatttcctgtttcagagctgaaataagccgttttttgtaaagaacagtccttttcagggaaatacttggagaccatagt
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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