Basic Information
VIS ID
TVIS10018288
Fusion event
HBV-LINC02265 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1827
Host Sequence
Chromosome
chr4
Cytoband
p14
Reference genome
GRCh37/hg19
Start
40317391/40315374 (Hg38)
End
40317391/40315374 (Hg38)
Location type
Intronic
Target gene
LINC02265
Nearest miRNA
hsa-mir-12113/Upstream/903400; hsa-mir-1243/Downstream/186666;
Nearest TSS
ENST00000502981/Upstream/49902; ENST00000510551/Downstream/1111;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/258110, chr4-CpG: 118/Downstream/122430
Upstream sequence
gggatgaagcccacttctgttacagaaggtcatctgttttactcaagtccactgatttaaatgttgatctcatccaaaaacaccttcacggaaacatcca
Downstream sequence
ataggggagcatgctcaaaatttgaatcagtaaatggagagatcagaaaagtttggagacctctgGGTTAGAATATAACACTAATTCCAGCCAGATAAGG
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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