Basic Information
VIS ID
TVIS10018290
Fusion event
HBV-LOC105379107 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1759
Host Sequence
Chromosome
chr5
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
103252897/103917196 (Hg38)
End
103252897/103917196 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA5F
Target gene
LOC105379107
Nearest miRNA
hsa-mir-10397/Upstream/3100631; hsa-mir-103a-1/Downstream/6596633;
Nearest TSS
ENST00000502646/Upstream/354403; ENST00000514769/Downstream/162715;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/657347, chr5-CpG: 253/Downstream/3752233
Upstream sequence
ACACCAGCAACTTAGACAGTATCataaatatttttagatacaaaatatgtaaattaaacttaataatgtaaaaatatttCTGGTCAATATTTATTTAAGT
Downstream sequence
GTGTGTTCTTTGCGAAACACAGCTTCCACAATTTGTTTCTGTCTGCCATCTTGTTCAAAACTATATCCCCTCCCCCAAAGAAAAACTATTCTACCTTTAA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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