Basic Information
VIS ID
TVIS10018293
Fusion event
HBV-MTRF1LP1 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
2572
Host Sequence
Chromosome
chr11
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
113582863/113712141 (Hg38)
End
113582863/113712141 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA11G
Target gene
MTRF1LP1
Nearest miRNA
hsa-mir-10392/Upstream/262053; hsa-let-7a-2/Downstream/4931859;
Nearest TSS
ENST00000527297/Upstream/5768; ENST00000453129/Downstream/59550;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/236535, chr11-CpG: 37/Downstream/61436
Upstream sequence
tattacattgaggtatgttccttcaatacctagtttgttgaaaatttttaacatgaagcttgttgaatttttccaaagccttttctgcatctattgagat
Downstream sequence
TTTTTGTAAATTCAGGAAGGCTTTATTTCTTAATTTCTTCATTTCTGAACCCCTGAGAGTGTCAAAGATGTCTGTCAGAGGCCATGGGAATTGTCGATGT
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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