Basic Information
VIS ID
TVIS10018295
Fusion event
HBV-LOC105370003 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1070
Host Sequence
Chromosome
chr12
Cytoband
q24.21
Reference genome
GRCh37/hg19
Start
115996094/115558289 (Hg38)
End
115996094/115558289 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA12E ; FRA12C
Target gene
LOC105370003
Nearest miRNA
hsa-let-7i/Upstream/2266681; hsa-mir-1178/Downstream/590271;
Nearest TSS
ENST00000382841/Upstream/195277; ENST00000548457/Downstream/11375;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/106099, chr12-CpG: 46/Downstream/358693
Upstream sequence
gataaacaactaaacagaattaggaaaacaatgcataaagaaaatgggaatagcaatacagaaaaatgatgaagaaaaaacaaccacattgtgtaaatgg
Downstream sequence
agaatacaataaccaaattgaaaaattcactgcagggattcaacagcagacttaaccaggcagaagaaaggatcagtaaacttgaaggcaaacttttgaa
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate