Basic Information
VIS ID
TVIS10018297
Fusion event
HBV-chr15 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1821
Host Sequence
Chromosome
chr15
Reference genome
GRCh37/hg19
Start
23479776
End
23686777
Location type
Intergenic
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Upstream sequence
TTGGTGACTACCGTAATCAAATCACATGTGAACTAACCTTCCACATGAACAACCACCATTTATTTTAGTGTGAACACATCAATTCCTTTGGGCTCTAATT
Downstream sequence
gtagctcctcctcctgcctcCACATCTCCTCCTGCAAAGTGTTGGTTTGAACCTCAAAAGGAAATAGACTTATGAACTAGCTATATAAATGTAATCTATA
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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