Basic Information
VIS ID
TVIS10018301
Fusion event
HBV-chr20 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
3548
Host Sequence
Chromosome
chr20
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
10317844/10337196 (Hg38)
End
10317844/10337196 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA20B
Nearest miRNA
hsa-mir-103a-2/Upstream/2965504; hsa-mir-1-1/Downstream/312440;
Nearest TSS
ENST00000382410/Upstream/40966; ENST00000334534/Downstream/31523;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/118860, chr20-CpG: 71/Downstream/96432
Nearby gene
HIGD1AP15(-1978) ;
Upstream sequence
GGGCCATCATTAGGGCCTTATCTCCAGATTTGTTTGAAGGGGAGGACCAACCAGGGTCTTATCTGGGTGGTAGAAGTGCTCCCGGGAGGGAGGGAGGCAT
Downstream sequence
TTATATAACCCTAGAGATACAAACATAATTTTAGTTGAGTTTTCTTTTGTAGAGAAAAATTGCAAAGGACTAAAATACACCCAAaaaaattactgtatgt
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
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