Basic Information
VIS ID
TVIS10018304
Fusion event
HBV-chr9 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1818
Host Sequence
Chromosome
chr9
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
126820801/124058522 (Hg38)
End
127170709/124408430 (Hg38)
Location type
Intronic
Target gene
LOC100129034 ; NEK6 ; PSMB7
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-26b-5p ; hsa-mir-24-3p ; hsa-mir-1307-3p ; hsa-mir-615-3p ; hsa-mir-18a-3p ; hsa-mir-92a-3p ; hsa-mir-23a-3p ; hsa-mir-3180-5p ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-3194-5p
Nearest miRNA
hsa-let-7a-1/Upstream/572900; hsa-mir-12126/Downstream/284012;
Nearest TSS
ENST00000422679/Upstream/25998; ENST00000618308/Downstream/6861;
Nearest CpG islands
chr9-CpG: 102/Target, None/Upstream, None/Downstream
Upstream sequence
GTTTTTGTTATTTTTTTACCAATTTAATGCAACCACCTCTTCTCGTTAGGGAGAAAAGATTCCTTTAAAAATCACGTTTGTAACTTAATTTGAAAATATG
Downstream sequence
tcattaatgtttaaaaattggttaagttgtaacatagccacaaaacggatactatgacaccaccaaaaattatgATAATGATTaatggttcttaagcttt
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate