VISDB Viral Integration Site DataBase

VIS ID

TVIS10018307

Fusion event

HBV-chr4 integration

Validated

No

Detection method

RNA-Seq

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HBV

Reference genome

Not given

Start

1787

Chromosome

chr4

Cytoband

q23

Reference genome

Start

End

99988320/99067169 (Hg38)

Location type

Intronic

Target gene

ADH5 ; METAP1

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-181a-5p ; hsa-mir-34a-5p ; hsa-mir-106b-5p ; hsa-mir-218-5p ; hsa-mir-4709-3p ; hsa-mir-4722-5p ; hsa-mir-1286 ; hsa-mir-4635 ; hsa-mir-873-5p ; hsa-mir-5197-5p ; hsa-mir-6510-3p ; hsa-mir-4668-5p ; hsa-mir-549a ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3613-3p ; hsa-mir-8087 ; hsa-mir-7161-5p ; hsa-mir-548u ; hsa-mir-4715-3p ; hsa-mir-5589-3p ; hsa-mir-6715b-5p ; hsa-mir-6872-3p ; hsa-mir-4269 ; hsa-mir-5582-5p ; hsa-mir-4777-5p ; hsa-mir-526a ; hsa-mir-523-5p ; hsa-mir-522-5p ; hsa-mir-520c-5p ; hsa-mir-519c-5p ; hsa-mir-519b-5p ; hsa-mir-519a-5p ; hsa-mir-518f-5p ; hsa-mir-518e-5p ; hsa-mir-518d-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-520g-5p ; hsa-mir-4282 ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-1227-3p ; hsa-mir-4451 ; hsa-mir-6799-5p ; hsa-mir-4252 ; hsa-mir-6499-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-1247-3p ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-548e-5p ; hsa-mir-1273f ; hsa-mir-129-5p ; hsa-mir-143-3p ; hsa-mir-4708-5p ; hsa-mir-4770 ; hsa-mir-6088 ; hsa-mir-6817-3p ; hsa-mir-6873-3p ; hsa-mir-6895-3p ; hsa-mir-7110-3p ; hsa-mir-8055

Nearest miRNA

hsa-mir-12113/Upstream/69709; hsa-mir-1243/Downstream/2173626;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/70751, chr4-CpG: 43/Downstream/21416

Upstream sequence

TGCATAATCTAAGTCAAATGGAAAGAAATATAAAAAGTAACATTATTACTTCTTGTTTTCTTCAGTATTTAACAATCCTTTTTTTTCTTCCCTTGCCCAG

Downstream sequence

TTGGGTCAGAGATCACCAGACAATTCCAGATAGAATTTTTTAAACTTAAATCTGAATTTGAGCCCTGGATGATTCTGAGGAAACAATGCCAAGGATAAGA