PDSS1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10018308
Fusion event
HBV-PDSS1 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
28622513
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1807
Host Sequence
Chromosome
chr10
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
26992312/26703383 (Hg38)
End
26992312/26703383 (Hg38)
Location type
Intronic
Target gene
PDSS1
miRNAs that regulate target gene
hsa-mir-148b-3p ; hsa-mir-124-3p ; hsa-mir-98-5p ; hsa-mir-106b-5p ; hsa-mir-320a
Nearest miRNA
hsa-mir-1265/Upstream/2427602; hsa-mir-107/Downstream/1585875;
Nearest TSS
ENST00000439456/Upstream/5724; ENST00000458171/Downstream/1925;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/5224, chr10-CpG: 85/Downstream/156854
Upstream sequence
atcccagcactttgggaggctgaggtgggcggaccacttgagctcagaagttccagaccaacctgggcacatggcaaaaccccatctctacaaaaaatac
Downstream sequence
ttttatgcagccagcattatcttgttatcaaagctctgaaaagaaaattttgaggaagaaaaattgcagaccaaaatatcttatgaatacagaagtcctg
Reference
Cancer Genome Atlas Research Network. Electronic address, w. b. e. and N. Cancer Genome Atlas Research . Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma. Cell ,2017,169(7): 1327-1341 e13
Curate